vtkKdTree.h

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/*=========================================================================

  Program:   Visualization Toolkit
  Module:    vtkKdTree.h

  Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen
  All rights reserved.
  See Copyright.txt or http://www.kitware.com/Copyright.htm for details.

     This software is distributed WITHOUT ANY WARRANTY; without even
     the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
     PURPOSE.  See the above copyright notice for more information.

=========================================================================*/
/*----------------------------------------------------------------------------
 Copyright (c) Sandia Corporation
 See Copyright.txt or http://www.paraview.org/HTML/Copyright.html for details.
----------------------------------------------------------------------------*/

#ifndef __vtkKdTree_h
#define __vtkKdTree_h

#include "vtkCommonDataModelModule.h" // For export macro
#include "vtkLocator.h"

class vtkTimerLog;
class vtkIdList;
class vtkIdTypeArray;
class vtkIntArray;
class vtkPointSet;
class vtkPoints;
class vtkCellArray;
class vtkCell;
class vtkKdNode;
class vtkBSPCuts;
class vtkBSPIntersections;
class vtkDataSetCollection;

class VTKCOMMONDATAMODEL_EXPORT vtkKdTree : public vtkLocator
{
public:
  vtkTypeMacro(vtkKdTree, vtkLocator);
  void PrintSelf(ostream& os, vtkIndent indent);

  static vtkKdTree *New();


  vtkBooleanMacro(Timing, int);
  vtkSetMacro(Timing, int);
  vtkGetMacro(Timing, int);


  vtkSetMacro(MinCells, int);
  vtkGetMacro(MinCells, int);

  vtkGetMacro(NumberOfRegionsOrLess, int);
  vtkSetMacro(NumberOfRegionsOrLess, int);

  vtkGetMacro(NumberOfRegionsOrMore, int);
  vtkSetMacro(NumberOfRegionsOrMore, int);

  vtkGetMacro(FudgeFactor, double);
  vtkSetMacro(FudgeFactor, double);

  vtkGetObjectMacro(Cuts, vtkBSPCuts);

  void SetCuts(vtkBSPCuts *cuts);

  void OmitXPartitioning();

  void OmitYPartitioning();

  void OmitZPartitioning();

  void OmitXYPartitioning();

  void OmitYZPartitioning();

  void OmitZXPartitioning();

  void OmitNoPartitioning();

  virtual void SetDataSet(vtkDataSet *set);

  virtual void AddDataSet(vtkDataSet *set);


  virtual void RemoveDataSet(int index);
  virtual void RemoveDataSet(vtkDataSet *set);
  virtual void RemoveAllDataSets();

  int GetNumberOfDataSets();

  vtkDataSet *GetDataSet(int n);

  vtkDataSet *GetDataSet(){ return this->GetDataSet(0); }


  vtkGetObjectMacro(DataSets, vtkDataSetCollection);

  int GetDataSetIndex(vtkDataSet *set);

  void GetBounds(double *bounds);

  void SetNewBounds(double *bounds);


  vtkGetMacro(NumberOfRegions, int);

  void GetRegionBounds(int regionID, double bounds[6]);

  void GetRegionDataBounds(int regionID, double bounds[6]);


  void PrintTree();
  void PrintVerboseTree();

  void PrintRegion(int id);

  void CreateCellLists(int dataSetIndex, int *regionReqList,
                       int reqListSize);
  void CreateCellLists(vtkDataSet *set, int *regionReqList,
                       int reqListSize);
  void CreateCellLists(int *regionReqList, int listSize);
  void CreateCellLists();


  vtkSetMacro(IncludeRegionBoundaryCells, int);
  vtkGetMacro(IncludeRegionBoundaryCells, int);
  vtkBooleanMacro(IncludeRegionBoundaryCells, int);

  void DeleteCellLists();

  vtkIdList *GetCellList(int regionID);

  vtkIdList *GetBoundaryCellList(int regionID);


  vtkIdType GetCellLists(vtkIntArray *regions, int set,
                   vtkIdList *inRegionCells, vtkIdList *onBoundaryCells);
  vtkIdType GetCellLists(vtkIntArray *regions, vtkDataSet *set,
            vtkIdList *inRegionCells, vtkIdList *onBoundaryCells);
  vtkIdType GetCellLists(vtkIntArray *regions, vtkIdList *inRegionCells,
                                    vtkIdList *onBoundaryCells);


  int GetRegionContainingCell(vtkDataSet *set, vtkIdType cellID);
  int GetRegionContainingCell(int set, vtkIdType cellID);
  int GetRegionContainingCell(vtkIdType cellID);

  int *AllGetRegionContainingCell();

  int GetRegionContainingPoint(double x, double y, double z);

  void BuildLocator();

  int MinimalNumberOfConvexSubRegions(vtkIntArray *regionIdList,
                                      double **convexRegionBounds);


  int ViewOrderAllRegionsInDirection(const double directionOfProjection[3],
                                     vtkIntArray *orderedList);


  int ViewOrderRegionsInDirection(vtkIntArray *regionIds,
                                  const double directionOfProjection[3],
                                  vtkIntArray *orderedList);


  int ViewOrderAllRegionsFromPosition(const double directionOfProjection[3],
                                      vtkIntArray *orderedList);


  int ViewOrderRegionsFromPosition(vtkIntArray *regionIds,
                                   const double directionOfProjection[3],
                                   vtkIntArray *orderedList);


  void BuildLocatorFromPoints(vtkPointSet *pointset);
  void BuildLocatorFromPoints(vtkPoints *ptArray);
  void BuildLocatorFromPoints(vtkPoints **ptArray, int numPtArrays);

  vtkIdTypeArray *BuildMapForDuplicatePoints(float tolerance);


  vtkIdType FindPoint(double *x);
  vtkIdType FindPoint(double x, double y, double z);


  vtkIdType FindClosestPoint(double *x, double &dist2);
  vtkIdType FindClosestPoint(double x, double y, double z, double &dist2);


  vtkIdType FindClosestPointWithinRadius(
    double radius, const double x[3], double& dist2);


  vtkIdType FindClosestPointInRegion(int regionId, double *x, double &dist2);
  vtkIdType FindClosestPointInRegion(int regionId, double x, double y, double z,
                                     double &dist2);

  void FindPointsWithinRadius(double R, const double x[3], vtkIdList *result);

  void FindClosestNPoints(int N, const double x[3], vtkIdList *result);

  vtkIdTypeArray *GetPointsInRegion(int regionId);

  void FreeSearchStructure();

  void GenerateRepresentation(int level, vtkPolyData *pd);

  void GenerateRepresentation(int *regionList, int len, vtkPolyData *pd);


  vtkBooleanMacro(GenerateRepresentationUsingDataBounds, int);
  vtkSetMacro(GenerateRepresentationUsingDataBounds, int);
  vtkGetMacro(GenerateRepresentationUsingDataBounds, int);

  virtual void PrintTiming(ostream& os, vtkIndent indent);

  virtual int NewGeometry();

  virtual int NewGeometry(vtkDataSet **sets, int numDataSets);

  virtual void InvalidateGeometry();

  static vtkKdNode *CopyTree(vtkKdNode *kd);

  void FindPointsInArea(double* area, vtkIdTypeArray* ids, bool clearArray = true);

protected:

  vtkKdTree();
  ~vtkKdTree();

  vtkBSPIntersections *BSPCalculator;
  int UserDefinedCuts;

  void SetCalculator(vtkKdNode *kd);

  int ProcessUserDefinedCuts(double *bounds);

  void SetCuts(vtkBSPCuts *cuts, int userDefined);

  void UpdateBuildTime();

  int DivideTest(int numberOfPoints, int level);

//BTX
  enum {
    XDIM = 0,  // don't change these values
    YDIM = 1,
    ZDIM = 2
  };
//ETX

  int ValidDirections;

  vtkKdNode *Top;
  vtkKdNode **RegionList;      // indexed by region ID

  vtkTimerLog *TimerLog;

  static void DeleteAllDescendants(vtkKdNode *nd);

  void BuildRegionList();
  virtual int SelectCutDirection(vtkKdNode *kd);
  void SetActualLevel(){this->Level = vtkKdTree::ComputeLevel(this->Top);}

  void GetRegionsAtLevel(int level, vtkKdNode **nodes);

  static void GetLeafNodeIds(vtkKdNode *node, vtkIntArray *ids);


  int GetNumberOfCells();

  int GetDataSetsNumberOfCells(int set1, int set2);

  void ComputeCellCenter(vtkDataSet *set, int cellId, float *center);
  void ComputeCellCenter(vtkDataSet *set, int cellId, double *center);

  float *ComputeCellCenters();
  float *ComputeCellCenters(int set);
  float *ComputeCellCenters(vtkDataSet *set);

  vtkDataSetCollection *DataSets;

  virtual void ReportReferences(vtkGarbageCollector*);

  void UpdateProgress(double amount);


  vtkSetClampMacro(Progress,double,0.0,1.0);
  vtkGetMacro(Progress,double);

protected:
  // So that each suboperation can report progress
  // in [0,1], yet we will be able to report a global
  // progress. Sub-operations must use UpdateSubOperationProgress()
  // for this to work.
  double ProgressScale;
  double ProgressOffset;

  // Update progress for a sub-operation. \c amount goes from 0.0 to 1.0.
  // Actual progress is given by
  // (this->ProgressOffset + this->ProgressScale* amount).
  void UpdateSubOperationProgress(double amount);

  static void _SetNewBounds(vtkKdNode *kd, double *b, int *fixDim);
  static void CopyChildNodes(vtkKdNode *to, vtkKdNode *from);
  static void CopyKdNode(vtkKdNode *to, vtkKdNode *from);
  static void SetDataBoundsToSpatialBounds(vtkKdNode *kd);
  static void ZeroNumberOfPoints(vtkKdNode *kd);

//BTX
  // Recursive helper for public FindPointsWithinRadius
  void FindPointsWithinRadius(vtkKdNode* node, double R2,
                              const double x[3], vtkIdList* ids);

  // Recursive helper for public FindPointsWithinRadius
  void AddAllPointsInRegion(vtkKdNode* node, vtkIdList* ids);

  // Recursive helper for public FindPointsInArea
  void FindPointsInArea(vtkKdNode* node, double* area, vtkIdTypeArray* ids);

  // Recursive helper for public FindPointsInArea
  void AddAllPointsInRegion(vtkKdNode* node, vtkIdTypeArray* ids);

  int DivideRegion(vtkKdNode *kd, float *c1, int *ids, int nlevels);

  void DoMedianFind(vtkKdNode *kd, float *c1, int *ids, int d1, int d2, int d3);

  void SelfRegister(vtkKdNode *kd);

  struct _cellList{
    vtkDataSet *dataSet;        // cell lists for which data set
    int *regionIds;            // NULL if listing all regions
    int nRegions;
    vtkIdList **cells;
    vtkIdList **boundaryCells;
    vtkIdList *emptyList;
  };
//ETX

  void InitializeCellLists();
  vtkIdList *GetList(int regionId, vtkIdList **which);

  void ComputeCellCenter(vtkCell* cell, double *center, double *weights);

  void GenerateRepresentationDataBounds(int level, vtkPolyData *pd);
  void _generateRepresentationDataBounds(vtkKdNode *kd, vtkPoints *pts,
                                         vtkCellArray *polys, int level);

  void GenerateRepresentationWholeSpace(int level, vtkPolyData *pd);
  void _generateRepresentationWholeSpace(vtkKdNode *kd, vtkPoints *pts,
                                         vtkCellArray *polys, int level);

  void AddPolys(vtkKdNode *kd, vtkPoints *pts, vtkCellArray *polys);

  void _printTree(int verbose);

  int SearchNeighborsForDuplicate(int regionId, float *point,
                                  int **pointsSoFar, int *len,
                                  float tolerance, float tolerance2);

  int SearchRegionForDuplicate(float *point, int *pointsSoFar,
                               int len, float tolerance2);

  int _FindClosestPointInRegion(int regionId,
                          double x, double y, double z, double &dist2);

  int FindClosestPointInSphere(double x, double y, double z, double radius,
                               int skipRegion, double &dist2);

  int _ViewOrderRegionsInDirection(vtkIntArray *IdsOfInterest,
                                   const double dop[3],
                                   vtkIntArray *orderedList);

  static int __ViewOrderRegionsInDirection(vtkKdNode *node, vtkIntArray *list,
                                           vtkIntArray *IdsOfInterest,
                                           const double dir[3], int nextId);

  int _ViewOrderRegionsFromPosition(vtkIntArray *IdsOfInterest,
                                    const double pos[3],
                                    vtkIntArray *orderedList);

  static int __ViewOrderRegionsFromPosition(vtkKdNode *node, vtkIntArray *list,
                                            vtkIntArray *IdsOfInterest,
                                            const double pos[3], int nextId);

  static int __ConvexSubRegions(int *ids, int len, vtkKdNode *tree, vtkKdNode **nodes);
  static int FoundId(vtkIntArray *idArray, int id);

  void NewParitioningRequest(int req);
  void SetInputDataInfo(int i,
       int dims[3], double origin[3], double spacing[3]);
  int CheckInputDataInfo(int i,
       int dims[3], double origin[3], double spacing[3]);
  void ClearLastBuildCache();

//BTX
  static void __printTree(vtkKdNode *kd, int depth, int verbose);
//ETX

  static int MidValue(int dim, float *c1, int nvals, double &coord);

  static int Select(int dim, float *c1, int *ids, int nvals, double &coord);
  static float FindMaxLeftHalf(int dim, float *c1, int K);
  static void _Select(int dim, float *X, int *ids, int L, int R, int K);

//BTX
  static int ComputeLevel(vtkKdNode *kd);
  static int SelfOrder(int id, vtkKdNode *kd);
  static int findRegion(vtkKdNode *node, float x, float y, float z);
  static int findRegion(vtkKdNode *node, double x, double y, double z);
//ETX

  static vtkKdNode **_GetRegionsAtLevel(int level, vtkKdNode **nodes,
                                        vtkKdNode *kd);

  static void AddNewRegions(vtkKdNode *kd, float *c1,
                            int midpt, int dim, double coord);

  void NewPartitioningRequest(int req);

  int NumberOfRegionsOrLess;
  int NumberOfRegionsOrMore;

  int IncludeRegionBoundaryCells;
  double CellBoundsCache[6];       // to optimize IntersectsCell()

  int GenerateRepresentationUsingDataBounds;

//BTX
  struct _cellList CellList;
//ETX

  // Region Ids, by data set by cell id - this list is large (one
  // int per cell) but accelerates creation of cell lists

  int *CellRegionList;

  int MinCells;
  int NumberOfRegions;              // number of leaf nodes

  int Timing;
  double FudgeFactor;   // a very small distance, relative to the dataset's size

  // These instance variables are used by the special locator created
  // to find duplicate points. (BuildLocatorFromPoints)

  int NumberOfLocatorPoints;
  float *LocatorPoints;
  int *LocatorIds;
  int *LocatorRegionLocation;

  float MaxWidth;

  // These Last* values are here to save state so we can
  // determine later if k-d tree must be rebuilt.

  int LastNumDataSets;
  int LastDataCacheSize;
  vtkDataSet **LastInputDataSets;
  unsigned long *LastDataSetObserverTags;
  int *LastDataSetType;
  double *LastInputDataInfo;
  double *LastBounds;
  vtkIdType *LastNumPoints;
  vtkIdType *LastNumCells;

  vtkBSPCuts *Cuts;
  double Progress;

  vtkKdTree(const vtkKdTree&); // Not implemented
  void operator=(const vtkKdTree&); // Not implemented
};
#endif