Steve,<br><br>Sounds like a vtk install problem. Maybe we can tickle someone at Kitware to look into it.<br><br>Bill<br><br><div class="gmail_quote">On Dec 10, 2007 3:40 PM, Steve Pieper <<a href="mailto:pieper@bwh.harvard.edu">
pieper@bwh.harvard.edu</a>> wrote:<br><blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">Hi Peter -<br><br>Yes, it sounds like there's a difference between building slicer against
<br>an installed vtk rather than the build tree. Can you build slicer by<br>pointing at your vtk build tree for now?<br><br>Regarding "VoxelView" format - I don't know... Slicer3 now relies on the<br>ITK IO factory for reading and writing and it's 'fairly' easy to
<br>implement these as long as your data is pretty standard volumes.<br><br>Best,<br><font color="#888888">Steve<br></font><div><div></div><div class="Wj3C7c"><br><br>Peter Wainwright wrote:<br>> On Mon, 2007-12-10 at 09:46 -0500, Steve Pieper wrote:
<br>>> Hi Bill, Peter -<br>>><br>>> Yes, slicer3 is typically built against the VTK-5-0 cvs branch.<br>>><br>>> I ran a slicer3 build against the vtk head and didn't see any issues.<br>>> Is your build against an install tree or a build tree?
<br>><br>> I guess you would say it was against an "install tree"? That is to say<br>> I did "make install" to install all the prerequisite packages in a<br>> common prefix "/usr/local/Vis" and then built Slicer3 for the same
<br>> prefix.<br>><br>> After installing those 2 headers Slicer3 built, installed and ran. I<br>> have not used it in anger since the data I am interested in is in an<br>> antique format and I have not been able to load it yet... do you have
<br>> any tools for importing the "VoxelView" file format? If not I must<br>> learn how to write an import module myself...<br>><br>> Peter<br>><br>>> Good luck,<br>>> Steve<br>>>
<br>>> Bill Lorensen wrote:<br>>>> Peter,<br>>>><br>>>> I've cross-posted this to the slicer developers list.<br>>>><br>>>> I don't think that Slicer3 builds against VTK cvs. I believe the
<br>>>> recommended VTK branch is: VTK-5-0.<br>>>><br>>>> Bill<br>>>> On Dec 9, 2007 5:58 AM, Peter Wainwright <<a href="mailto:prw@ceiriog.eclipse.co.uk">prw@ceiriog.eclipse.co.uk</a>
<br>>>> <mailto:<a href="mailto:prw@ceiriog.eclipse.co.uk">prw@ceiriog.eclipse.co.uk</a>>> wrote:<br>>>><br>>>> Hi,<br>>>><br>>>> I'm trying to compile the latest SVN version of Slicer3
<br>>>><br>>>> <a href="http://www.na-mic.org/Wiki/index.php/Slicer3" target="_blank">http://www.na-mic.org/Wiki/index.php/Slicer3</a><br>>>><br>>>> using the latest CVS version of VTK. The compilation complains about a
<br>>>> couple of missing headers:<br>>>><br>>>> [ 16%] Building CXX object Libs/MRML/CMakeFiles/MRML.dir/vtkMRMLScene.o<br>>>> In file included<br>>>> from /usr/local/Vis3/bin/../include/vtk-
5.1/vtksys/hash_map.hxx:42,<br>>>><br>>>> from /home/prw/src/Slicer3-20071209/Libs/MRML/vtkMRMLScene.h:32,<br>>>><br>>>> from /home/prw/src/Slicer3-20071209/Libs/MRML/vtkMRMLScene.cxx:22:
<br>>>> /usr/local/Vis3/bin/../include/vtk-5.1/vtksys/hashtable.hxx:44:43:<br>>>> error: vtksys/cstddef: No such file or directory<br>>>> make[2]: *** [Libs/MRML/CMakeFiles/MRML.dir/vtkMRMLScene.o] Error 1
<br>>>><br>>>><br>>>><br>>>><br>>>> /home/prw/src/Slicer3-20071209/Base/Logic/vtkImageSlice.cxx:27:35:<br>>>> error: vtkTemplateAliasMacro.h: No such file or directory
<br>>>> make[2]: *** [Base/Logic/CMakeFiles/SlicerBaseLogic.dir/vtkImageSlice.o]<br>>>> Error 1<br>>>> make[1]: *** [Base/Logic/CMakeFiles/SlicerBaseLogic.dir/all] Error 2<br>>>> make: *** [all] Error 2
<br>>>><br>>>> I have found the same problem in CVS/SVN versions of VTK/Slicer3 for<br>>>> several months now. I work around the problem by manually "installing"<br>>>> the header files where Slicer3 expects to find them.
<br>>>><br>>>> Can you tell me whether these are public headers (in which case VTK<br>>>> should be fixed to install them) or whether they are internal private<br>>>> headers (in which case Slicer3 should not be using them)?
<br>>>><br>>>><br>>>> Thanks,<br>>>> Peter Wainwright<br>>>><br>>>> _______________________________________________<br>>>> This is the private VTK discussion list.
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