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ID | Project | Category | View Status | Date Submitted | Last Update | ||||
0010779 | VTK | (No Category) | public | 2010-05-28 16:10 | 2013-07-10 10:00 | ||||
Reporter | Justin | ||||||||
Assigned To | Dave DeMarle | ||||||||
Priority | normal | Severity | minor | Reproducibility | have not tried | ||||
Status | closed | Resolution | fixed | ||||||
Platform | OS | OS Version | |||||||
Product Version | |||||||||
Target Version | Fixed in Version | 6.0.0 | |||||||
Summary | 0010779: FindR module doesn't detect >R-2.10 correctly | ||||||||
Description | Perhaps it also applies for lower versions but the is no libR{lapack,blas}.so anmore, but everything is included in libRmath.so. On gentoo we are using attached patch. There will be a better solution, so please fix that. | ||||||||
Additional Information | Trusting Orion that this is working now. If not, please reopen. | ||||||||
Tags | No tags attached. | ||||||||
Project | TBD | ||||||||
Type | incorrect functionality | ||||||||
Attached Files | vtk-5.6.0-R.patch [^] (2,463 bytes) 2010-05-28 16:10 [Show Content]
vtk-5.6.1-R.patch [^] (878 bytes) 2011-03-16 14:01 [Show Content] | ||||||||
Relationships | |
Relationships |
Notes | |
(0025794) Orion Poplawski (reporter) 2011-03-16 13:44 |
Are you sure? On fedora with R 2.12 there is: /usr/lib64/R/lib/libR.so /usr/lib64/R/lib/libRblas.so /usr/lib64/R/lib/libRlapack.so There is also /usr/lib64/libRmath.so. Not sure how they relate. Also, on Fedora R.h is in /usr/include/R and this is not found. |
(0025795) Orion Poplawski (reporter) 2011-03-16 14:07 |
Using my 5.6.1 patch I get: [ 24%] Building CXX object Graphics/CMakeFiles/vtkGraphics.dir/vtkRRandomTableSource.cxx.o cd /builddir/build/BUILD/VTK/build/Graphics && /usr/lib64/ccache/c++ -DvtkGraphics_EXPORTS -DVTK_IN_VTK -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -D_UNICODE -Wno-deprecated -fPIC -I/builddir/build/BUILD/VTK/build -I/builddir/build/BUILD/VTK/build/Common -I/builddir/build/BUILD/VTK/build/Utilities -I/builddir/build/BUILD/VTK/build/VolumeRendering -I/builddir/build/BUILD/VTK/build/Rendering -I/builddir/build/BUILD/VTK/build/Charts -I/builddir/build/BUILD/VTK/build/Utilities/vtkalglib -I/builddir/build/BUILD/VTK/Infovis -I/builddir/build/BUILD/VTK/TextAnalysis -I/builddir/build/BUILD/VTK/Geovis -I/builddir/build/BUILD/VTK/Views -I/builddir/build/BUILD/VTK/Parallel -I/builddir/build/BUILD/VTK/VolumeRendering -I/builddir/build/BUILD/VTK/Hybrid -I/builddir/build/BUILD/VTK/Widgets -I/builddir/build/BUILD/VTK/Rendering -I/builddir/build/BUILD/VTK/Charts -I/builddir/build/BUILD/VTK/Rendering/Testing/Cxx -I/builddir/build/BUILD/VTK/IO -I/builddir/build/BUILD/VTK/Imaging -I/builddir/build/BUILD/VTK/Graphics -I/builddir/build/BUILD/VTK/GenericFiltering -I/builddir/build/BUILD/VTK/Filtering -I/builddir/build/BUILD/VTK/Common -I/builddir/build/BUILD/VTK/Utilities -I/builddir/build/BUILD/VTK/Common/Testing/Cxx -I/builddir/build/BUILD/VTK/build/Utilities/vtklibproj4 -I/builddir/build/BUILD/VTK/Utilities/vtklibproj4 -I/builddir/build/BUILD/VTK/build/Utilities/DICOMParser -I/builddir/build/BUILD/VTK/Utilities/DICOMParser -I/builddir/build/BUILD/VTK/build/Utilities/vtknetcdf -I/builddir/build/BUILD/VTK/Utilities/vtknetcdf -I/builddir/build/BUILD/VTK/build/Utilities/vtkexodus2/include -I/builddir/build/BUILD/VTK/Utilities/vtkexodus2/include -I/builddir/build/BUILD/VTK/build/Utilities/MaterialLibrary -I/builddir/build/BUILD/VTK/Utilities/MaterialLibrary -I/builddir/build/BUILD/VTK/build/Utilities/verdict -I/builddir/build/BUILD/VTK/Utilities/verdict -I/builddir/build/BUILD/VTK/build/Utilities/Cosmo -I/builddir/build/BUILD/VTK/Utilities/Cosmo -I/builddir/build/BUILD/VTK/build/Utilities/VPIC -I/builddir/build/BUILD/VTK/Utilities/VPIC -I/builddir/build/BUILD/VTK/Utilities/utf8/source -I/builddir/build/BUILD/VTK/GUISupport/Qt -I/builddir/build/BUILD/VTK/build/GUISupport/Qt -I/builddir/build/BUILD/VTK/GUISupport/Qt/Chart -I/builddir/build/BUILD/VTK/build/GUISupport/Qt/Chart -I/builddir/build/BUILD/VTK/Utilities/vtkalglib -I/builddir/build/BUILD/VTK/Utilities/ftgl/src -I/builddir/build/BUILD/VTK/build/Utilities/ftgl -I/usr/include/tk-private/generic -I/usr/include/python2.7 -I/usr/lib/jvm/java/include -I/usr/lib/jvm/java/include/linux -I/usr/include/libxml2 -I/usr/include/freetype2 -fvisibility=hidden -fvisibility-inlines-hidden -o CMakeFiles/vtkGraphics.dir/vtkRRandomTableSource.cxx.o -c /builddir/build/BUILD/VTK/Graphics/vtkRRandomTableSource.cxx /builddir/build/BUILD/VTK/Graphics/vtkRRandomTableSource.cxx:37:15: fatal error: R.h: No such file or directory It did find R: ../root/builddir/build/BUILD/VTK/build/CMakeCache.txt:R_INCLUDE_DIR:PATH=/usr/include/R but apparently that isn't being added to the compile flags? |
(0025796) Justin (reporter) 2011-03-17 03:43 |
I was wrong. The blas stuff is in /usr/lib64/R/lib/libR.so. but we don't have any /usr/lib64/R/lib/libRblas.so /usr/lib64/R/lib/libRlapack.so. |
(0025797) Justin (reporter) 2011-03-17 03:54 |
Are those symlinks to libR.so? |
(0025798) Orion Poplawski (reporter) 2011-03-17 10:41 |
Nope: # ls -l /usr/lib/R/lib total 4104 -rwxr-xr-x. 1 root root 156180 Feb 27 11:42 libRblas.so -rwxr-xr-x. 1 root root 1375452 Feb 27 11:42 libRlapack.so -rwxr-xr-x. 1 root root 2666068 Feb 27 11:42 libR.so |
(0030888) Jean-Christophe Fillion-Robin (manager) 2013-06-05 10:37 |
Is this still problem using either VTK 5.10 or VTK 6 ? |
(0030891) Orion Poplawski (reporter) 2013-06-05 11:41 |
It appears that it is working fine for me with vtk 6.0.0rc2, Fedora 18, and R 2.10. Although I had to explicitly enable Module_StatisticsGnuR. |
(0030907) Justin (reporter) 2013-06-05 15:00 |
I will test this as soon vtk-6 is released. |
(0031107) Justin (reporter) 2013-06-30 12:29 |
Seems to work here. |
Notes |
Issue History | |||
Date Modified | Username | Field | Change |
2010-05-28 16:10 | Justin | New Issue | |
2010-05-28 16:10 | Justin | File Added: vtk-5.6.0-R.patch | |
2011-03-16 13:44 | Orion Poplawski | Note Added: 0025794 | |
2011-03-16 14:01 | Orion Poplawski | File Added: vtk-5.6.1-R.patch | |
2011-03-16 14:07 | Orion Poplawski | Note Added: 0025795 | |
2011-03-17 03:43 | Justin | Note Added: 0025796 | |
2011-03-17 03:54 | Justin | Note Added: 0025797 | |
2011-03-17 10:41 | Orion Poplawski | Note Added: 0025798 | |
2011-06-16 13:11 | Zack Galbreath | Category | => (No Category) |
2012-02-13 11:04 | Jeff Baumes | Project | => Titan |
2012-02-13 11:04 | Jeff Baumes | Type | => incorrect functionality |
2013-06-05 10:37 | Jean-Christophe Fillion-Robin | Note Added: 0030888 | |
2013-06-05 11:41 | Orion Poplawski | Note Added: 0030891 | |
2013-06-05 15:00 | Justin | Note Added: 0030907 | |
2013-06-30 12:29 | Justin | Note Added: 0031107 | |
2013-07-10 09:59 | Dave DeMarle | Assigned To | => Dave DeMarle |
2013-07-10 09:59 | Dave DeMarle | Status | backlog => tabled |
2013-07-10 10:00 | Dave DeMarle | Project | Titan => TBD |
2013-07-10 10:00 | Dave DeMarle | Status | tabled => closed |
2013-07-10 10:00 | Dave DeMarle | Resolution | open => fixed |
2013-07-10 10:00 | Dave DeMarle | Fixed in Version | => 6.0.0 |
2013-07-10 10:00 | Dave DeMarle | Additional Information Updated |
Issue History |
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