VTK  9.3.20240423
vtkMoleculeMapper.h
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1// SPDX-FileCopyrightText: Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen
2// SPDX-License-Identifier: BSD-3-Clause
34#ifndef vtkMoleculeMapper_h
35#define vtkMoleculeMapper_h
36
37#include "vtkDomainsChemistryModule.h" // For export macro
38#include "vtkMapper.h"
39#include "vtkNew.h" // For vtkNew
40
41VTK_ABI_NAMESPACE_BEGIN
42class vtkActor;
44class vtkIdTypeArray;
45class vtkMolecule;
47class vtkPolyData;
49class vtkRenderer;
50class vtkSelection;
51class vtkSphereSource;
53
54class VTKDOMAINSCHEMISTRY_EXPORT vtkMoleculeMapper : public vtkMapper
55{
56public:
59 void PrintSelf(ostream& os, vtkIndent indent) override;
60
62
68
81
94
107
123
125
128 vtkGetMacro(RenderAtoms, bool);
129 vtkSetMacro(RenderAtoms, bool);
130 vtkBooleanMacro(RenderAtoms, bool);
132
134
137 vtkGetMacro(RenderBonds, bool);
138 vtkSetMacro(RenderBonds, bool);
139 vtkBooleanMacro(RenderBonds, bool);
141
143
147 vtkGetMacro(RenderLattice, bool);
148 vtkSetMacro(RenderLattice, bool);
149 vtkBooleanMacro(RenderLattice, bool);
151
152 enum
153 {
154 CovalentRadius = 0,
157 CustomArrayRadius
158 };
159
161
166 vtkGetMacro(AtomicRadiusType, int);
167 vtkSetMacro(AtomicRadiusType, int);
169 void SetAtomicRadiusTypeToCovalentRadius() { this->SetAtomicRadiusType(CovalentRadius); }
170 void SetAtomicRadiusTypeToVDWRadius() { this->SetAtomicRadiusType(VDWRadius); }
171 void SetAtomicRadiusTypeToUnitRadius() { this->SetAtomicRadiusType(UnitRadius); }
172 void SetAtomicRadiusTypeToCustomArrayRadius() { this->SetAtomicRadiusType(CustomArrayRadius); }
174
176
181 vtkGetMacro(AtomicRadiusScaleFactor, float);
182 vtkSetMacro(AtomicRadiusScaleFactor, float);
184
186
190 vtkGetMacro(UseMultiCylindersForBonds, bool);
191 vtkSetMacro(UseMultiCylindersForBonds, bool);
192 vtkBooleanMacro(UseMultiCylindersForBonds, bool);
194
195 enum
196 {
197 SingleColor = 0,
198 DiscreteByAtom
199 };
200
202
212 vtkGetMacro(BondColorMode, int);
213 vtkSetClampMacro(BondColorMode, int, SingleColor, DiscreteByAtom);
214 void SetBondColorModeToSingleColor() { this->SetBondColorMode(SingleColor); }
215 void SetBondColorModeToDiscreteByAtom() { this->SetBondColorMode(DiscreteByAtom); }
218
220
229 vtkGetMacro(AtomColorMode, int);
230 vtkSetClampMacro(AtomColorMode, int, SingleColor, DiscreteByAtom);
232
234
238 vtkGetVector3Macro(AtomColor, unsigned char);
239 vtkSetVector3Macro(AtomColor, unsigned char);
241
243
247 vtkGetVector3Macro(BondColor, unsigned char);
248 vtkSetVector3Macro(BondColor, unsigned char);
250
252
255 vtkGetMacro(BondRadius, float);
256 vtkSetMacro(BondRadius, float);
258
260
264 vtkGetVector3Macro(LatticeColor, unsigned char);
265 vtkSetVector3Macro(LatticeColor, unsigned char);
267
269
274 vtkSelection* selection, vtkIdTypeArray* atomIds, vtkIdTypeArray* bondIds);
275 virtual void GetSelectedAtoms(vtkSelection* selection, vtkIdTypeArray* atomIds)
276 {
277 this->GetSelectedAtomsAndBonds(selection, atomIds, nullptr);
278 }
279 virtual void GetSelectedBonds(vtkSelection* selection, vtkIdTypeArray* bondIds)
280 {
281 this->GetSelectedAtomsAndBonds(selection, nullptr, bondIds);
282 }
284
286
289 void Render(vtkRenderer*, vtkActor*) override;
291 double* GetBounds() override;
292 void GetBounds(double bounds[6]) override { Superclass::GetBounds(bounds); }
293 int FillInputPortInformation(int port, vtkInformation* info) override;
294 bool GetSupportsSelection() override { return true; }
296
298
302 vtkGetStringMacro(AtomicRadiusArrayName);
303 vtkSetStringMacro(AtomicRadiusArrayName);
305
310 virtual void SetMapScalars(bool map);
311
315 vtkPeriodicTable* GetPeriodicTable() { return this->PeriodicTable; }
316
317protected:
320
322
330 unsigned char AtomColor[3];
332
334
341 unsigned char BondColor[3];
343
345
350
352
360 virtual void UpdateGlyphPolyData();
364
366
372
373 unsigned char LatticeColor[3];
376 virtual void UpdateLatticePolyData();
377
382
383private:
384 vtkMoleculeMapper(const vtkMoleculeMapper&) = delete;
385 void operator=(const vtkMoleculeMapper&) = delete;
386};
387
388VTK_ABI_NAMESPACE_END
389#endif
virtual double * GetBounds()=0
Return bounding box (array of six doubles) of data expressed as (xmin,xmax, ymin,ymax,...
represents an object (geometry & properties) in a rendered scene
Definition vtkActor.h:151
vtkGlyph3D on the GPU.
dynamic, self-adjusting array of vtkIdType
a simple class to control print indentation
Definition vtkIndent.h:108
Store vtkAlgorithm input/output information.
abstract class specifies interface to map data to graphics primitives
Definition vtkMapper.h:137
Mapper that draws vtkMolecule objects.
virtual void GetSelectedBonds(vtkSelection *selection, vtkIdTypeArray *bondIds)
Extract the ids atoms and/or bonds rendered by this molecule from a vtkSelection object.
const char * GetBondColorModeAsString()
Get/Set the method by which bonds are colored.
virtual void GetSelectedAtoms(vtkSelection *selection, vtkIdTypeArray *atomIds)
Extract the ids atoms and/or bonds rendered by this molecule from a vtkSelection object.
virtual void SetMapScalars(bool map)
Helper method to set ScalarMode on both AtomGlyphMapper and BondGlyphMapper.
void SetBondColorModeToDiscreteByAtom()
Get/Set the method by which bonds are colored.
void SetAtomicRadiusTypeToUnitRadius()
Get/Set the type of radius used to generate the atoms.
bool GlyphDataInitialized
Cached variables and update methods.
vtkNew< vtkGlyph3DMapper > AtomGlyphMapper
Internal mappers.
bool RenderAtoms
Customize atom rendering.
vtkPeriodicTable * GetPeriodicTable()
Accessor to internal structure.
void SetAtomicRadiusTypeToVDWRadius()
Get/Set the type of radius used to generate the atoms.
void UseLiquoriceStickSettings()
Set ivars to default liquorice stick settings.
vtkNew< vtkPeriodicTable > PeriodicTable
Periodic table for lookups.
float AtomicRadiusScaleFactor
Customize atom rendering.
void PrintSelf(ostream &os, vtkIndent indent) override
Methods invoked by print to print information about the object including superclasses.
virtual void GetSelectedAtomsAndBonds(vtkSelection *selection, vtkIdTypeArray *atomIds, vtkIdTypeArray *bondIds)
Extract the ids atoms and/or bonds rendered by this molecule from a vtkSelection object.
float BondRadius
Customize bond rendering.
~vtkMoleculeMapper() override
int AtomicRadiusType
Customize atom rendering.
bool RenderBonds
Customize bond rendering.
void Render(vtkRenderer *, vtkActor *) override
Reimplemented from base class.
void SetAtomicRadiusTypeToCustomArrayRadius()
Get/Set the type of radius used to generate the atoms.
void SetAtomicRadiusTypeToCovalentRadius()
Get/Set the type of radius used to generate the atoms.
char * AtomicRadiusArrayName
Customize atom rendering.
int FillInputPortInformation(int port, vtkInformation *info) override
Reimplemented from base class.
static vtkMoleculeMapper * New()
virtual void UpdateAtomGlyphPolyData()
Cached variables and update methods.
int AtomColorMode
Customize atom rendering.
double * GetBounds() override
Reimplemented from base class.
virtual void UpdateGlyphPolyData()
Cached variables and update methods.
vtkNew< vtkPolyData > BondGlyphPolyData
Cached variables and update methods.
vtkNew< vtkTrivialProducer > BondGlyphPointOutput
Cached variables and update methods.
void UseFastSettings()
Set ivars to use fast settings that may be useful for rendering extremely large molecules where the o...
void SetBondColorModeToSingleColor()
Get/Set the method by which bonds are colored.
bool UseMultiCylindersForBonds
Customize bond rendering.
bool GetSupportsSelection() override
Reimplemented from base class.
const char * GetAtomicRadiusTypeAsString()
Get/Set the type of radius used to generate the atoms.
vtkNew< vtkGlyph3DMapper > BondGlyphMapper
Internal mappers.
vtkMolecule * GetInput()
Get/Set the input vtkMolecule.
void SetInputData(vtkMolecule *in)
Get/Set the input vtkMolecule.
virtual void UpdateLatticePolyData()
void UseBallAndStickSettings()
Set ivars to default ball-and-stick settings.
void GlyphRender(vtkRenderer *ren, vtkActor *act)
Internal render methods.
int BondColorMode
Customize bond rendering.
void ReleaseGraphicsResources(vtkWindow *) override
Reimplemented from base class.
void UseVDWSpheresSettings()
Set ivars to default van der Waals spheres settings.
vtkNew< vtkTrivialProducer > AtomGlyphPointOutput
Cached variables and update methods.
void GetBounds(double bounds[6]) override
Reimplemented from base class.
virtual void UpdateBondGlyphPolyData()
Cached variables and update methods.
vtkNew< vtkPolyDataMapper > LatticeMapper
vtkNew< vtkPolyData > LatticePolyData
vtkNew< vtkPolyData > AtomGlyphPolyData
Cached variables and update methods.
class describing a molecule
Definition vtkMolecule.h:84
Allocate and hold a VTK object.
Definition vtkNew.h:160
Access to information about the elements.
map vtkPolyData to graphics primitives
concrete dataset represents vertices, lines, polygons, and triangle strips
abstract specification for renderers
data object that represents a "selection" in VTK.
create a polygonal sphere centered at the origin
Producer for stand-alone data objects.
window superclass for vtkRenderWindow
Definition vtkWindow.h:48