A container for a MINC image header. More...

#include <vtkMINCImageAttributes.h>

Inheritance diagram for vtkMINCImageAttributes:

Collaboration diagram for vtkMINCImageAttributes:

Public Types
typedef vtkObject	Superclass

Public Member Functions
virtual vtkTypeBool	IsA (const char *type)
	Return 1 if this class is the same type of (or a subclass of) the named class. More...

vtkMINCImageAttributes *	NewInstance () const

void	PrintSelf (ostream &os, vtkIndent indent) override
	Methods invoked by print to print information about the object including superclasses. More...

virtual void	Reset ()
	Reset all the attributes in preparation for loading new information. More...

virtual vtkStringArray *	GetDimensionNames ()
	Get the dimension names. More...

virtual vtkIdTypeArray *	GetDimensionLengths ()
	Get the lengths of all the dimensions. More...

virtual vtkStringArray *	GetVariableNames ()
	Get the names of all the variables. More...

virtual vtkStringArray *	GetAttributeNames (const char *variable)
	List the attribute names for a variable. More...

virtual vtkTypeBool	HasAttribute (const char variable, const char attribute)
	Check to see if a particular attribute exists. More...

virtual int	ValidateAttribute (const char varname, const char attname, vtkDataArray *array)
	Validate a particular attribute. More...

virtual void	ShallowCopy (vtkMINCImageAttributes *source)
	Do a shallow copy. More...

virtual void	FindValidRange (double range[2])
	Find the valid range of the data from the information stored in the attributes. More...

virtual void	FindImageRange (double range[2])
	Find the image range of the data from the information stored in the attributes. More...


virtual void	SetName (const char *)
	Get the name of the image, not including the path or the extension. More...

virtual char *	GetName ()
	Get the name of the image, not including the path or the extension. More...


virtual void	SetDataType (int)
	Get the image data type, as stored on disk. More...

virtual int	GetDataType ()
	Get the image data type, as stored on disk. More...


virtual void	AddDimension (const char *dimension)
	Add the names of up to five dimensions. More...

virtual void	AddDimension (const char *dimension, vtkIdType length)
	Add the names of up to five dimensions. More...


virtual void	SetImageMin (vtkDoubleArray *imageMin)
	Get the image min and max arrays. More...

virtual void	SetImageMax (vtkDoubleArray *imageMax)
	Get the image min and max arrays. More...

virtual vtkDoubleArray *	GetImageMin ()
	Get the image min and max arrays. More...

virtual vtkDoubleArray *	GetImageMax ()
	Get the image min and max arrays. More...


virtual int	GetNumberOfImageMinMaxDimensions ()
	Get the number of ImageMinMax dimensions. More...

virtual void	SetNumberOfImageMinMaxDimensions (int)
	Get the number of ImageMinMax dimensions. More...


virtual void	SetAttributeValueAsArray (const char variable, const char attribute, vtkDataArray *array)
	Set attribute values for a variable as a vtkDataArray. More...

virtual vtkDataArray *	GetAttributeValueAsArray (const char variable, const char attribute)
	Set attribute values for a variable as a vtkDataArray. More...


virtual void	SetAttributeValueAsString (const char variable, const char attribute, const char *value)
	Set an attribute value as a string. More...

virtual const char *	GetAttributeValueAsString (const char variable, const char attribute)
	Set an attribute value as a string. More...


virtual void	SetAttributeValueAsInt (const char variable, const char attribute, int value)
	Set an attribute value as an int. More...

virtual int	GetAttributeValueAsInt (const char variable, const char attribute)
	Set an attribute value as an int. More...


virtual void	SetAttributeValueAsDouble (const char variable, const char attribute, double value)
	Set an attribute value as a double. More...

virtual double	GetAttributeValueAsDouble (const char variable, const char attribute)
	Set an attribute value as a double. More...


virtual void	SetValidateAttributes (vtkTypeBool)
	Set this to Off if you do not want to automatically validate every attribute that is set. More...

virtual void	ValidateAttributesOn ()
	Set this to Off if you do not want to automatically validate every attribute that is set. More...

virtual void	ValidateAttributesOff ()
	Set this to Off if you do not want to automatically validate every attribute that is set. More...

virtual vtkTypeBool	GetValidateAttributes ()
	Set this to Off if you do not want to automatically validate every attribute that is set. More...


virtual void	PrintFileHeader ()
	A diagnostic function. More...

virtual void	PrintFileHeader (ostream &os)
	A diagnostic function. More...

Public Member Functions inherited from vtkObject
	vtkBaseTypeMacro (vtkObject, vtkObjectBase)

virtual void	DebugOn ()
	Turn debugging output on. More...

virtual void	DebugOff ()
	Turn debugging output off. More...

bool	GetDebug ()
	Get the value of the debug flag. More...

void	SetDebug (bool debugFlag)
	Set the value of the debug flag. More...

virtual void	Modified ()
	Update the modification time for this object. More...

virtual vtkMTimeType	GetMTime ()
	Return this object's modified time. More...

void	RemoveObserver (unsigned long tag)

void	RemoveObservers (unsigned long event)

void	RemoveObservers (const char *event)

void	RemoveAllObservers ()

vtkTypeBool	HasObserver (unsigned long event)

vtkTypeBool	HasObserver (const char *event)

vtkTypeBool	InvokeEvent (unsigned long event)

vtkTypeBool	InvokeEvent (const char *event)

std::string	GetObjectDescription () const override
	The object description printed in messages and PrintSelf output. More...

unsigned long	AddObserver (unsigned long event, vtkCommand *, float priority=0.0f)
	Allow people to add/remove/invoke observers (callbacks) to any VTK object. More...

unsigned long	AddObserver (const char event, vtkCommand , float priority=0.0f)
	Allow people to add/remove/invoke observers (callbacks) to any VTK object. More...

vtkCommand *	GetCommand (unsigned long tag)
	Allow people to add/remove/invoke observers (callbacks) to any VTK object. More...

void	RemoveObserver (vtkCommand *)
	Allow people to add/remove/invoke observers (callbacks) to any VTK object. More...

void	RemoveObservers (unsigned long event, vtkCommand *)
	Allow people to add/remove/invoke observers (callbacks) to any VTK object. More...

void	RemoveObservers (const char event, vtkCommand )
	Allow people to add/remove/invoke observers (callbacks) to any VTK object. More...

vtkTypeBool	HasObserver (unsigned long event, vtkCommand *)
	Allow people to add/remove/invoke observers (callbacks) to any VTK object. More...

vtkTypeBool	HasObserver (const char event, vtkCommand )
	Allow people to add/remove/invoke observers (callbacks) to any VTK object. More...

template<class U , class T >
unsigned long	AddObserver (unsigned long event, U observer, void(T::*callback)(), float priority=0.0f)
	Overloads to AddObserver that allow developers to add class member functions as callbacks for events. More...

template<class U , class T >
unsigned long	AddObserver (unsigned long event, U observer, void(T::callback)(vtkObject , unsigned long, void *), float priority=0.0f)
	Overloads to AddObserver that allow developers to add class member functions as callbacks for events. More...

template<class U , class T >
unsigned long	AddObserver (unsigned long event, U observer, bool(T::callback)(vtkObject , unsigned long, void *), float priority=0.0f)
	Allow user to set the AbortFlagOn() with the return value of the callback method. More...

vtkTypeBool	InvokeEvent (unsigned long event, void *callData)
	This method invokes an event and return whether the event was aborted or not. More...

vtkTypeBool	InvokeEvent (const char event, void callData)
	This method invokes an event and return whether the event was aborted or not. More...

virtual void	SetObjectName (const std::string &objectName)
	Set/get the name of this object for reporting purposes. More...

virtual std::string	GetObjectName () const
	Set/get the name of this object for reporting purposes. More...

Public Member Functions inherited from vtkObjectBase
const char *	GetClassName () const
	Return the class name as a string. More...

virtual vtkIdType	GetNumberOfGenerationsFromBase (const char *name)
	Given the name of a base class of this class type, return the distance of inheritance between this class type and the named class (how many generations of inheritance are there between this class and the named class). More...

virtual void	Delete ()
	Delete a VTK object. More...

virtual void	FastDelete ()
	Delete a reference to this object. More...

void	InitializeObjectBase ()

void	Print (ostream &os)
	Print an object to an ostream. More...

void	Register (vtkObjectBase *o)
	Increase the reference count (mark as used by another object). More...

virtual void	UnRegister (vtkObjectBase *o)
	Decrease the reference count (release by another object). More...

int	GetReferenceCount ()
	Return the current reference count of this object. More...

void	SetReferenceCount (int)
	Sets the reference count. More...

bool	GetIsInMemkind () const
	A local state flag that remembers whether this object lives in the normal or extended memory space. More...

virtual void	PrintHeader (ostream &os, vtkIndent indent)
	Methods invoked by print to print information about the object including superclasses. More...

virtual void	PrintTrailer (ostream &os, vtkIndent indent)
	Methods invoked by print to print information about the object including superclasses. More...

virtual bool	UsesGarbageCollector () const
	Indicate whether the class uses `vtkGarbageCollector` or not. More...

Static Public Member Functions
static vtkTypeBool	IsTypeOf (const char *type)

static vtkMINCImageAttributes *	SafeDownCast (vtkObjectBase *o)

static vtkMINCImageAttributes *	New ()

Static Public Member Functions inherited from vtkObject
static vtkObject *	New ()
	Create an object with Debug turned off, modified time initialized to zero, and reference counting on. More...

static void	BreakOnError ()
	This method is called when vtkErrorMacro executes. More...

static void	SetGlobalWarningDisplay (vtkTypeBool val)
	This is a global flag that controls whether any debug, warning or error messages are displayed. More...

static void	GlobalWarningDisplayOn ()
	This is a global flag that controls whether any debug, warning or error messages are displayed. More...

static void	GlobalWarningDisplayOff ()
	This is a global flag that controls whether any debug, warning or error messages are displayed. More...

static vtkTypeBool	GetGlobalWarningDisplay ()
	This is a global flag that controls whether any debug, warning or error messages are displayed. More...

Static Public Member Functions inherited from vtkObjectBase
static vtkTypeBool	IsTypeOf (const char *name)
	Return 1 if this class type is the same type of (or a subclass of) the named class. More...

static vtkIdType	GetNumberOfGenerationsFromBaseType (const char *name)
	Given a the name of a base class of this class type, return the distance of inheritance between this class type and the named class (how many generations of inheritance are there between this class and the named class). More...

static vtkObjectBase *	New ()
	Create an object with Debug turned off, modified time initialized to zero, and reference counting on. More...

static void	SetMemkindDirectory (const char *directoryname)
	The name of a directory, ideally mounted -o dax, to memory map an extended memory space within. More...

static bool	GetUsingMemkind ()
	A global state flag that controls whether vtkObjects are constructed in the usual way (the default) or within the extended memory space. More...

Protected Member Functions
virtual vtkObjectBase *	NewInstanceInternal () const

	vtkMINCImageAttributes ()

	~vtkMINCImageAttributes () override

const char *	ConvertDataArrayToString (vtkDataArray *array)

virtual int	ValidateGlobalAttribute (const char attrib, vtkDataArray array)

virtual int	ValidateGeneralAttribute (const char varname, const char attname, vtkDataArray *array)

virtual int	ValidateDimensionAttribute (const char varname, const char attname, vtkDataArray *array)

virtual int	ValidateImageAttribute (const char varname, const char attname, vtkDataArray *array)

virtual int	ValidateImageMinMaxAttribute (const char varname, const char attname, vtkDataArray *array)

virtual int	ValidatePatientAttribute (const char varname, const char attname, vtkDataArray *array)

virtual int	ValidateStudyAttribute (const char varname, const char attname, vtkDataArray *array)

virtual int	ValidateAcquisitionAttribute (const char varname, const char attname, vtkDataArray *array)

Protected Member Functions inherited from vtkObject
	vtkObject ()

	~vtkObject () override

void	RegisterInternal (vtkObjectBase *, vtkTypeBool check) override

void	UnRegisterInternal (vtkObjectBase *, vtkTypeBool check) override

void	InternalGrabFocus (vtkCommand mouseEvents, vtkCommand keypressEvents=nullptr)
	These methods allow a command to exclusively grab all events. More...

void	InternalReleaseFocus ()
	These methods allow a command to exclusively grab all events. More...

Protected Member Functions inherited from vtkObjectBase
	vtkObjectBase ()

virtual	~vtkObjectBase ()

virtual void	ReportReferences (vtkGarbageCollector *)

	vtkObjectBase (const vtkObjectBase &)

void	operator= (const vtkObjectBase &)

Protected Attributes
vtkStringArray *	DimensionNames

vtkIdTypeArray *	DimensionLengths

vtkStringArray *	VariableNames

vtkMINCImageAttributeMap *	AttributeNames

vtkMINCImageAttributeMap *	AttributeValues

vtkStringArray *	StringStore

vtkDoubleArray *	ImageMin

vtkDoubleArray *	ImageMax

int	NumberOfImageMinMaxDimensions

int	DataType

char *	Name

vtkTypeBool	ValidateAttributes

Protected Attributes inherited from vtkObject
bool	Debug

vtkTimeStamp	MTime

vtkSubjectHelper *	SubjectHelper

std::string	ObjectName

Protected Attributes inherited from vtkObjectBase
std::atomic< int32_t >	ReferenceCount

vtkWeakPointerBase **	WeakPointers

Additional Inherited Members
Static Protected Member Functions inherited from vtkObjectBase
static vtkMallocingFunction	GetCurrentMallocFunction ()

static vtkReallocingFunction	GetCurrentReallocFunction ()

static vtkFreeingFunction	GetCurrentFreeFunction ()

static vtkFreeingFunction	GetAlternateFreeFunction ()

Detailed Description

A container for a MINC image header.

This class provides methods to access all of the information contained in the MINC header. If you read a MINC file into VTK and then write it out again, you can use writer->SetImageAttributes(reader->GetImageAttributes) to ensure that all of the medical information contained in the file is transferred from the reader to the writer. If you want to change any of the header information, you must use ShallowCopy to make a copy of the reader's attributes and then modify only the copy.

See also: vtkMINCImageReader vtkMINCImageWriter

Thanks:: Thanks to David Gobbi for writing this class and Atamai Inc. for contributing it to VTK.

Tests:: vtkMINCImageAttributes (Tests)

Definition at line 43 of file vtkMINCImageAttributes.h.

Member Typedef Documentation

◆ Superclass

typedef vtkObject vtkMINCImageAttributes::Superclass

Definition at line 46 of file vtkMINCImageAttributes.h.

Constructor & Destructor Documentation

◆ vtkMINCImageAttributes()

vtkMINCImageAttributes::vtkMINCImageAttributes ( )

protected

◆ ~vtkMINCImageAttributes()

vtkMINCImageAttributes::~vtkMINCImageAttributes ( )

overrideprotected

Member Function Documentation

◆ IsTypeOf()

static vtkTypeBool vtkMINCImageAttributes::IsTypeOf ( const char * type )

static

◆ IsA()

virtual vtkTypeBool vtkMINCImageAttributes::IsA ( const char * name )

virtual

Return 1 if this class is the same type of (or a subclass of) the named class.

Returns 0 otherwise. This method works in combination with vtkTypeMacro found in vtkSetGet.h.

Reimplemented from vtkObjectBase.

◆ SafeDownCast()

static vtkMINCImageAttributes* vtkMINCImageAttributes::SafeDownCast ( vtkObjectBase * o )

static

◆ NewInstanceInternal()

virtual vtkObjectBase* vtkMINCImageAttributes::NewInstanceInternal ( ) const

protectedvirtual

◆ NewInstance()

vtkMINCImageAttributes* vtkMINCImageAttributes::NewInstance ( ) const

◆ New()

static vtkMINCImageAttributes* vtkMINCImageAttributes::New ( )

static

◆ PrintSelf()

void vtkMINCImageAttributes::PrintSelf	(	ostream &	os,
		vtkIndent	indent
	)

overridevirtual

Methods invoked by print to print information about the object including superclasses.

Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from vtkObject.

◆ Reset()

virtual void vtkMINCImageAttributes::Reset ( )

virtual

Reset all the attributes in preparation for loading new information.

◆ SetName()

virtual void vtkMINCImageAttributes::SetName ( const char * )

virtual

Get the name of the image, not including the path or the extension.

This is only needed for printing the header and there is usually no need to set it.

◆ GetName()

virtual char* vtkMINCImageAttributes::GetName ( )

virtual

Get the name of the image, not including the path or the extension.

This is only needed for printing the header and there is usually no need to set it.

◆ SetDataType()

virtual void vtkMINCImageAttributes::SetDataType ( int )

virtual

Get the image data type, as stored on disk.

This information is useful if the file was converted to floating-point when it was loaded. When writing a file from float or double image data, you can use this method to prescribe the output type.

◆ GetDataType()

virtual int vtkMINCImageAttributes::GetDataType ( )

virtual

Get the image data type, as stored on disk.

This information is useful if the file was converted to floating-point when it was loaded. When writing a file from float or double image data, you can use this method to prescribe the output type.

◆ AddDimension() [1/2]

virtual void vtkMINCImageAttributes::AddDimension ( const char * dimension )

inlinevirtual

Add the names of up to five dimensions.

The ordering of these dimensions will determine the dimension order of the file. If no DimensionNames are set, the writer will set the dimension order of the file to be the same as the dimension order in memory.

Definition at line 85 of file vtkMINCImageAttributes.h.

◆ AddDimension() [2/2]

virtual void vtkMINCImageAttributes::AddDimension	(	const char *	dimension,
		vtkIdType	length
	)

virtual

Add the names of up to five dimensions.

The ordering of these dimensions will determine the dimension order of the file. If no DimensionNames are set, the writer will set the dimension order of the file to be the same as the dimension order in memory.

◆ GetDimensionNames()

virtual vtkStringArray* vtkMINCImageAttributes::GetDimensionNames ( )

inlinevirtual

Get the dimension names.

The dimension names are same order as written in the file, starting with the slowest-varying dimension. Use this method to get the array if you need to change "space" dimensions to "frequency" after performing a Fourier transform.

Definition at line 96 of file vtkMINCImageAttributes.h.

◆ GetDimensionLengths()

virtual vtkIdTypeArray* vtkMINCImageAttributes::GetDimensionLengths ( )

inlinevirtual

Get the lengths of all the dimensions.

The dimension lengths are informative, the vtkMINCImageWriter does not look at these values but instead uses the dimension sizes of its input.

Definition at line 103 of file vtkMINCImageAttributes.h.

◆ GetVariableNames()

virtual vtkStringArray* vtkMINCImageAttributes::GetVariableNames ( )

inlinevirtual

Get the names of all the variables.

Definition at line 108 of file vtkMINCImageAttributes.h.

◆ GetAttributeNames()

virtual vtkStringArray* vtkMINCImageAttributes::GetAttributeNames ( const char * variable )

virtual

List the attribute names for a variable.

Set the variable to the empty string to get a list of the global attributes.

◆ SetImageMin()

virtual void vtkMINCImageAttributes::SetImageMin ( vtkDoubleArray * imageMin )

virtual

Get the image min and max arrays.

These are set by the reader, but they aren't used by the writer except to compute the full real data range of the original file.

◆ SetImageMax()

virtual void vtkMINCImageAttributes::SetImageMax ( vtkDoubleArray * imageMax )

virtual

Get the image min and max arrays.

These are set by the reader, but they aren't used by the writer except to compute the full real data range of the original file.

◆ GetImageMin()

virtual vtkDoubleArray* vtkMINCImageAttributes::GetImageMin ( )

inlinevirtual

Get the image min and max arrays.

These are set by the reader, but they aren't used by the writer except to compute the full real data range of the original file.

Definition at line 124 of file vtkMINCImageAttributes.h.

◆ GetImageMax()

virtual vtkDoubleArray* vtkMINCImageAttributes::GetImageMax ( )

inlinevirtual

Get the image min and max arrays.

These are set by the reader, but they aren't used by the writer except to compute the full real data range of the original file.

Definition at line 125 of file vtkMINCImageAttributes.h.

◆ GetNumberOfImageMinMaxDimensions()

virtual int vtkMINCImageAttributes::GetNumberOfImageMinMaxDimensions ( )

virtual

Get the number of ImageMinMax dimensions.

◆ SetNumberOfImageMinMaxDimensions()

virtual void vtkMINCImageAttributes::SetNumberOfImageMinMaxDimensions ( int )

virtual

Get the number of ImageMinMax dimensions.

◆ HasAttribute()

virtual vtkTypeBool vtkMINCImageAttributes::HasAttribute	(	const char *	variable,
		const char *	attribute
	)

virtual

Check to see if a particular attribute exists.

◆ SetAttributeValueAsArray()

virtual void vtkMINCImageAttributes::SetAttributeValueAsArray	(	const char *	variable,
		const char *	attribute,
		vtkDataArray *	array
	)

virtual

Set attribute values for a variable as a vtkDataArray.

Set the variable to the empty string to access global attributes.

◆ GetAttributeValueAsArray()

virtual vtkDataArray* vtkMINCImageAttributes::GetAttributeValueAsArray	(	const char *	variable,
		const char *	attribute
	)

virtual

Set attribute values for a variable as a vtkDataArray.

Set the variable to the empty string to access global attributes.